STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_03664Fe-4S ferredoxin iron-sulfur binding protein. (527 aa)    
Predicted Functional Partners:
CF8_2503
Glutamate synthase (NADH) large subunit.
 
 0.999
CF8_0565
Short-chain dehydrogenase/reductase SDR.
  
 0.996
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
  
 
 0.991
CF8_0604
Glutamate synthase (ferredoxin); Belongs to the glutamate synthase family.
  
 0.941
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.916
CF8_1408
Alpha-ketoglutarate decarboxylase.
   
 
 0.909
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
   
 0.907
CF8_3085
Isocitrate dehydrogenase, NADP-dependent; Belongs to the monomeric-type IDH family.
  
 
 0.904
CF8_2102
4Fe-4S ferredoxin iron-sulfur binding protein.
 
0.902
CF8_1795
4Fe-4S ferredoxin iron-sulfur binding protein.
 
0.900
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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