Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0400Hypothetical protein. (253 aa)    
Predicted Functional Partners:
CF8_0399
Hypothetical protein.
 
     0.699
CF8_0401
Ppx/GppA phosphatase.
       0.668
CF8_0402
Xylose isomerase domain-containing protein.
       0.668
CF8_0398
Methyltransferase type 11.
       0.658
CF8_0851
GCN5-related N-acetyltransferase.
  
     0.603
CF8_0403
TetR family transcriptional regulator.
       0.562
CF8_3298
Hypothetical protein.
  
     0.557
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.547
CF8_0405
ABC-2 type transporter.
       0.529
CF8_0404
ABC transporter-like protein.
       0.489
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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