Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0430Cytochrome c biogenesis protein, transmembrane. (251 aa)    
Predicted Functional Partners:
CF8_0432
Cytochrome c assembly protein.
 
  
 0.967
CF8_0431
ResB family protein.
 
  
 0.962
CF8_0429
Redoxin domain-containing protein.
 
  
 0.960
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.876
CF8_0428
Phosphoglycerate mutase.
  
    0.875
CF8_0433
Hypothetical protein.
       0.786
CF8_0426
Secreted protein.
     
 0.506
CF8_0227
Redoxin domain-containing protein.
 
  
 0.490
CF8_0424
uroporphyrinogen-III synthase.
  
    0.418
CF8_2762
Cytochrome c, class I.
  
   
 0.403
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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