Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0476GntR family transcriptional regulator. (269 aa)    
Predicted Functional Partners:
CF8_0477
Extracellular solute-binding protein.
 
     0.774
CF8_0475
Acetyl xylan esterase.
       0.773
CF8_0481
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.771
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.743
CF8_0479
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.645
CF8_4207
GntR family transcriptional regulator.
  
  
 0.635
CF8_2073
GntR family transcriptional regulator.
  
     0.584
CF8_1537
GntR family transcriptional regulator.
  
    0.556
CF8_0642
GntR family transcriptional regulator.
  
    0.547
CF8_0478
Binding-protein-dependent transport system.
 
     0.533
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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