Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0480Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily. (359 aa)    
Predicted Functional Partners:
CF8_0478
Binding-protein-dependent transport system.
 
  
  0.969
CF8_0477
Extracellular solute-binding protein.
 
 
  0.960
CF8_1897
Binding-protein-dependent transport system.
  
 0.934
CF8_1899
Binding-protein-dependent transport system.
 
  
  0.872
CF8_0481
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
    0.865
CF8_0479
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.814
CF8_1898
Extracellular solute-binding protein.
 
 
  0.808
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.805
CF8_0482
ROK family protein.
 
     0.799
CF8_1607
ABC-3 protein.
     
  0.668
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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