Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_05022,4-dienoyl-CoA reductase. (362 aa)    
Predicted Functional Partners:
CF8_2503
Glutamate synthase (NADH) large subunit.
    
  0.821
CF8_1497
Electron transfer flavoprotein beta-subunit.
  
 0.775
CF8_1498
Electron transfer flavoprotein, alpha subunit.
   
 0.725
CF8_0793
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.692
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.681
CF8_0503
Glycosyl transferase, group 1.
       0.634
CF8_1168
Respiratory nitrate reductase beta subunit.
    
   0.631
CF8_3289
CarD family transcriptional regulator.
   
    0.601
CF8_0369
FAD dependent oxidoreductase; Belongs to the GcvT family.
  
 
 0.595
CF8_0504
Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
  0.562
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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