Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0508Hypothetical protein. (116 aa)    
Predicted Functional Partners:
CF8_0509
Hypothetical protein.
 
     0.800
CF8_0507
Stress protein.
       0.773
CF8_0510
ArsR family transcriptional regulator.
       0.762
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
   0.710
CF8_3829
Silent information regulator protein Sir2.
    
   0.710
CF8_0436
Major facilitator transporter.
  
     0.697
CF8_2316
Hypothetical protein.
 
     0.650
CF8_0144
Peptidase S8 and S53, subtilisin, kexin; Belongs to the peptidase S8 family.
  
     0.599
CF8_3091
Major facilitator transporter.
  
     0.561
CF8_1669
Hypothetical protein.
  
     0.554
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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