Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_0518Hypothetical protein. (132 aa)    
Predicted Functional Partners:
CF8_0519
Dehydratase.
 
 0.999
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
 
     0.855
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
  
  
 0.831
CF8_2114
Enoyl-(acyl carrier protein) reductase.
  
 
 0.711
CF8_1141
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  
 0.697
CF8_1145
CdaR family transcriptional regulator.
  
     0.684
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.660
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
 
  
 0.657
CF8_2315
3-hydroxyacyl-CoA dehydrogenase.
 
 0.652
CF8_4123
Hypothetical protein.
    
  0.621
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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