Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_05584-carboxymuconolactone decarboxylase. (258 aa)    
Predicted Functional Partners:
CF8_0572
Muconolactone delta-isomerase.
  
 
 0.886
CF8_0559
3-oxoacid CoA-transferase, A subunit.
  
 
 0.832
CF8_0560
butyryl-CoA:acetate CoA transferase.
  
 
 0.832
CF8_0561
Hypothetical protein.
 
     0.804
CF8_1408
Alpha-ketoglutarate decarboxylase.
    
 0.798
CF8_0557
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
    
  0.785
CF8_0552
Catechol 1,2-dioxygenase.
  
  
  0.703
CF8_0571
Catechol 1,2-dioxygenase.
  
  
  0.676
CF8_3663
2,4-dienoyl-CoA reductase.
  
 0.676
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
  0.595
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.