STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0573Methyltransferase type 12. (201 aa)    
Predicted Functional Partners:
CF8_1565
FAD dependent oxidoreductase.
   
  0.898
CF8_0369
FAD dependent oxidoreductase; Belongs to the GcvT family.
   
  0.744
CF8_1218
Hypothetical protein.
   
   0.738
CF8_0571
Catechol 1,2-dioxygenase.
       0.737
CF8_0572
Muconolactone delta-isomerase.
       0.737
CF8_1334
Protoporphyrin IX magnesium-chelatase.
  
 0.604
CF8_0569
LysR, substrate-binding protein.
       0.600
CF8_0570
Mandelate racemase/muconate lactonizing protein.
       0.600
CF8_3814
Hypothetical protein.
 
     0.566
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.564
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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