Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0595Alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family. (602 aa)    
Predicted Functional Partners:
CF8_3263
PTS system glucose-like transporter subunit IIB.
 
 
 0.967
CF8_1486
Hypothetical protein.
  
 0.951
CF8_2392
Putative transporter.
    
  0.816
CF8_2711
Amino acid permease-associated region.
    
  0.816
CF8_3105
Amino acid permease-associated region.
    
  0.816
CF8_3826
Alpha amylase, catalytic region.
 
  
 
0.787
CF8_0717
Ribokinase-like domain-containing protein.
 
  
 0.746
CF8_1487
Trehalose synthase.
  
  
 
0.746
CF8_3673
Beta-glucosidase.
 
 
 0.742
CF8_1492
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.730
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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