Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0622Hypothetical protein. (286 aa)    
Predicted Functional Partners:
CF8_2503
Glutamate synthase (NADH) large subunit.
    
 0.807
CF8_0621
O-methyl transferase.
       0.773
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.603
CF8_0620
Hypothetical protein.
       0.572
CF8_0623
Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.541
CF8_0624
Putative RNA polymerase ECF-subfamily sigma.
       0.541
CF8_0619
Lysine exporter protein LysE/YggA.
       0.525
CF8_2538
Glutamate--cysteine ligase, GCS2.
 
  
 0.505
CF8_2111
Cyanophycin synthetase.
    
 0.491
CF8_0618
GDSL family lipase.
       0.443
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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