Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0629VWA containing CoxE family protein. (370 aa)    
Predicted Functional Partners:
CF8_0628
ATPase.
 
     0.948
CF8_0635
Carbon monoxide dehydrogenase subunit G.
 
     0.873
CF8_0633
Xanthine dehydrogenase, molybdenum binding.
 
   
 0.872
CF8_0634
Carbon monoxide dehydrogenase, medium subunit.
 
     0.847
CF8_0630
Hypothetical protein.
 
     0.830
CF8_0363
ATPase.
 
     0.783
CF8_0345
Carbon monoxide dehydrogenase subunit G.
 
     0.777
CF8_4177
ATPase.
 
     0.767
CF8_0130
ATPase.
 
     0.765
CF8_0627
Hypothetical protein.
 
     0.745
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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