Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0656Hypothetical protein. (280 aa)    
Predicted Functional Partners:
CF8_3804
Hypothetical protein.
  
     0.748
CF8_1148
Hypothetical protein.
  
     0.677
CF8_0655
Major facilitator transporter.
       0.670
CF8_2973
Hypothetical protein.
  
     0.670
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.652
CF8_2401
Hypothetical protein.
  
     0.611
CF8_1893
Hypothetical protein.
  
     0.576
CF8_0386
Hypothetical protein.
  
     0.545
CF8_0270
DNA polymerase III, delta prime subunit.
  
     0.530
CF8_2759
Hypothetical protein.
  
     0.515
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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