Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_0666Aminoglycoside phosphotransferase. (281 aa)    
Predicted Functional Partners:
CF8_2834
Phosphoglycerate mutase.
 
    0.588
CF8_1126
Hypothetical protein.
 
     0.566
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.546
CF8_1474
GCN5-related N-acetyltransferase.
  
 
   0.525
CF8_2066
Chloramphenicol phosphotransferase.
  
     0.490
CF8_2467
GCN5-related N-acetyltransferase.
  
 
   0.484
CF8_4116
Hypothetical protein.
  
     0.449
CF8_2315
3-hydroxyacyl-CoA dehydrogenase.
  
 0.445
CF8_3649
Short chain enoyl-CoA hydratase.
  
 0.445
CF8_1831
Regulatory protein, TetR.
  
     0.424
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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