Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0670Hypothetical protein. (430 aa)    
Predicted Functional Partners:
CF8_0672
Secreted protein.
 
    0.962
CF8_0673
Integral membrane protein.
 
    0.962
CF8_0674
Hypothetical protein.
 
     0.957
CF8_0671
ATPase.
 
    0.912
CF8_0669
Integral membrane protein.
 
  
 0.818
CF8_0668
RDD domain-containing protein.
 
    0.777
CF8_1382
Hypothetical protein.
   
    0.530
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
     
 0.519
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
      
 0.515
CF8_3518
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
      
 0.511
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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