Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0722OmpA/MotB domain-containing protein. (290 aa)    
Predicted Functional Partners:
CF8_0983
Putative Homoserine dehydrogenase.
  
 0.702
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.683
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.635
CF8_4123
Hypothetical protein.
   
   0.622
CF8_2876
Hypothetical protein.
  
     0.588
CF8_0499
Hypothetical protein.
  
     0.567
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.547
CF8_0724
ATP synthase subunit E.
 
    0.531
CF8_0111
Peptidase S8 and S53, subtilisin, kexin.
    
  0.524
CF8_0112
Hypothetical protein.
    
  0.524
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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