Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0802Hypothetical protein. (211 aa)    
Predicted Functional Partners:
CF8_0801
FAD-dependent pyridine nucleotide-disulfide.
 
     0.707
CF8_2782
PspA/IM30 family protein.
 
  
 0.674
CF8_2781
Hypothetical protein.
  
     0.660
CF8_2994
Hypothetical protein.
  
    0.633
CF8_3024
Hypothetical protein.
  
     0.629
CF8_1451
Hypothetical protein.
  
     0.588
CF8_1452
Hypothetical protein.
  
     0.567
CF8_0793
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.558
CF8_3679
Transcriptional regulator, TetR family.
  
     0.554
CF8_3538
Hypothetical protein.
 
  
 0.545
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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