CF8_0806 protein (Nocardioides sp. CF8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CF8_0806

Binding-protein-dependent transport system; Overlaps another CDS with the same product name. (276 aa)

Predicted Functional Partners:

CF8_0807

0.999

CF8_0808

0.999

CF8_0180

0.998

CF8_0179

0.997

CF8_0182

0.997

CF8_0291

0.991

CF8_0804

0.990

CF8_3228

0.990

CF8_0181

0.769

CF8_2801

0.703

Your Current Organism:

Nocardioides sp. CF8

NCBI taxonomy Id: 110319
Other names: N. sp. CF8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CF8_0179	CF8_0180	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.993
CF8_0179	CF8_0181	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.956
CF8_0179	CF8_0182	Extracellular solute-binding protein.	ABC transporter-like protein; Belongs to the ABC transporter superfamily.	0.989
CF8_0179	CF8_0291	Extracellular solute-binding protein.	ABC transporter-like protein.	0.927
CF8_0179	CF8_0804	Extracellular solute-binding protein.	ABC transporter.	0.916
CF8_0179	CF8_0806	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.997
CF8_0179	CF8_0807	Extracellular solute-binding protein.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.992
CF8_0180	CF8_0179	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.993
CF8_0180	CF8_0181	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.999
CF8_0180	CF8_0182	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein; Belongs to the ABC transporter superfamily.	0.998
CF8_0180	CF8_0291	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein.	0.977
CF8_0180	CF8_0804	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter.	0.969
CF8_0180	CF8_0806	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.998
CF8_0180	CF8_0808	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.962
CF8_0180	CF8_2801	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	PTS system, fructose subfamily, IIC subunit.	0.514
CF8_0180	CF8_3228	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.944
CF8_0181	CF8_0179	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Extracellular solute-binding protein.	0.956
CF8_0181	CF8_0180	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	0.999
CF8_0181	CF8_0182	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein; Belongs to the ABC transporter superfamily.	0.998
CF8_0181	CF8_0291	Binding-protein-dependent transport system; Overlaps another CDS with the same product name.	ABC transporter-like protein.	0.980