Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0835Hypothetical protein. (159 aa)    
Predicted Functional Partners:
CF8_1173
Nitric oxide dioxygenase; Belongs to the globin family.
  
  
 0.869
CF8_0836
MFS transporter.
       0.757
CF8_1870
Hypothetical protein.
  
     0.643
CF8_2101
Hypothetical protein.
  
     0.641
CF8_1796
Hypothetical protein.
  
     0.608
CF8_0837
LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family.
       0.544
CF8_0838
Hypothetical protein.
       0.544
CF8_0834
Cell wall surface anchor family protein.
       0.533
CF8_2517
Polysaccharide biosynthesis protein.
  
     0.528
CF8_1783
TetR family transcriptional regulator.
  
     0.473
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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