Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CF8_0870PaaX domain-containing protein, C- domain. (252 aa)    
Predicted Functional Partners:
CF8_0869
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.700
CF8_1355
phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.523
CF8_1352
phenylacetate-CoA oxygenase subunit PaaA.
 
   
 0.521
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
 
   
 0.499
CF8_0976
Putative transcriptional regulator.
  
    0.433
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
 
     0.421
CF8_1353
phenylacetate-CoA oxygenase subunit PaaB.
 
   
 0.411
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
    0.406
CF8_3829
Silent information regulator protein Sir2.
   
    0.406
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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