Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_0891Glutamate dehydrogenase (NAD). (1632 aa)    
Predicted Functional Partners:
CF8_2034
Forkhead-associated protein.
    
 
 0.924
CF8_2503
Glutamate synthase (NADH) large subunit.
     
 0.903
CF8_2596
L-glutamine synthetase.
     
 0.896
CF8_1408
Alpha-ketoglutarate decarboxylase.
   
 
 0.893
CF8_1637
L-glutamine synthetase.
     
 0.864
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.844
CF8_0737
Citrate synthase; Belongs to the citrate synthase family.
     
 0.822
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.820
CF8_3821
Citrate synthase 2; Belongs to the citrate synthase family.
     
 0.814
CF8_2504
Glutamate synthase subunit beta.
     
 0.810
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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