Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_0917Type II secretion system protein E. (433 aa)    
Predicted Functional Partners:
CF8_0919
Type II secretion system protein.
 
 
  0.954
CF8_0918
Integral membrane protein.
 
 
  0.920
CF8_2741
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
 0.909
CF8_2740
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
  0.899
CF8_0916
Hypothetical protein.
 
 
  0.861
CF8_0898
Type II secretion system protein E.
  
  
  0.823
CF8_2738
Flp pilus assembly protein ATPase CpaE-like.
 
 
 0.786
CF8_0253
Type II secretion system protein; Overlaps another CDS with the same product name.
 
 
 0.689
CF8_0961
Type II secretion system protein.
 
 
  0.624
CF8_0915
SAF domain-containing protein.
 
    0.620
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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