Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0936Transcriptional regulator. (230 aa)    
Predicted Functional Partners:
CF8_0935
acetyl-CoA synthetase.
  
 
  0.787
CF8_0275
IclR family transcriptional regulator.
  
     0.762
CF8_0555
IclR family transcriptional regulator.
  
     0.761
CF8_4061
Regulatory protein, IclR.
  
     0.745
CF8_3530
Regulatory protein, IclR.
  
     0.731
CF8_0997
Regulatory protein, IclR.
  
     0.676
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
  0.634
CF8_0938
AMP-dependent synthetase and ligase.
 
     0.570
CF8_0937
ABC transporter-like protein.
 
     0.567
CF8_0212
Regulatory protein, IclR.
  
     0.558
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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