Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CF8_0941ABC-type branched-chain amino acid transport. (360 aa)    
Predicted Functional Partners:
CF8_0940
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.921
CF8_0942
ABC transporter-like protein.
 
 
  0.918
CF8_0937
ABC transporter-like protein.
 
 
  0.915
CF8_0939
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.903
CF8_0943
phenylacetate--CoA ligase.
 
    0.900
CF8_0938
AMP-dependent synthetase and ligase.
 
    0.875
CF8_1583
ABC transporter-like protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.856
CF8_1580
ABC transporter-like protein.
 
 
  0.847
CF8_1582
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.819
CF8_1585
ABC transporter-like protein.
 
 
  0.810
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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