Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0943phenylacetate--CoA ligase. (401 aa)    
Predicted Functional Partners:
CF8_0942
ABC transporter-like protein.
 
 
  0.931
CF8_0941
ABC-type branched-chain amino acid transport.
 
    0.900
CF8_0938
AMP-dependent synthetase and ligase.
 
    0.848
CF8_1584
ABC-type branched-chain amino acid transport.
 
    0.787
CF8_0937
ABC transporter-like protein.
 
    0.784
CF8_0952
Phenylacetic acid degradation protein PaaD.
 
 
 0.775
CF8_1581
AMP-dependent synthetase and ligase.
 
    0.772
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
 
 
 0.745
CF8_1585
ABC transporter-like protein.
 
 
  0.734
CF8_1353
phenylacetate-CoA oxygenase subunit PaaB.
 
 
 0.724
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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