Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0944Hypothetical protein. (153 aa)    
Predicted Functional Partners:
CF8_3519
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.714
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
     
 0.694
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.660
CF8_1141
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.655
CF8_4123
Hypothetical protein.
    
  0.621
CF8_3758
MATE efflux family protein.
  
 
  0.606
CF8_2623
Type III restriction enzyme.
     
  0.603
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
     
  0.603
CF8_2187
Hypothetical protein.
  
  0.602
CF8_2227
Hypothetical protein.
  
  0.602
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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