Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_0949Cobalamin B12-binding domain-containing protein. (143 aa)    
Predicted Functional Partners:
CF8_0950
methylmalonyl-CoA mutase.
 0.998
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 0.977
CF8_3067
methylmalonyl-CoA mutase.
 0.972
CF8_1459
methylmalonyl-CoA epimerase.
 
  
 0.961
CF8_1461
LAO/AO transport system ATPase.
 0.960
CF8_0951
LAO/AO transport system ATPase.
 
 0.954
CF8_3065
LAO/AO transport system ATPase.
 0.945
CF8_3066
methylmalonyl-CoA mutase.
 
0.863
CF8_2503
Glutamate synthase (NADH) large subunit.
     
  0.806
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
     
 0.775
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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