Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_0965Hypothetical protein. (154 aa)    
Predicted Functional Partners:
CF8_0964
TadE family protein.
 
     0.957
CF8_0966
Hypothetical protein.
       0.807
CF8_0961
Type II secretion system protein.
 
     0.788
CF8_0880
Hypothetical protein.
  
     0.773
CF8_0960
Type II secretion system protein E.
 
     0.772
CF8_0879
Putative signal peptide protein.
  
     0.771
CF8_0878
DNA binding domain-containing protein.
  
     0.720
CF8_1201
Hypothetical protein.
  
     0.686
CF8_0898
Type II secretion system protein E.
 
     0.629
CF8_1200
Hypothetical protein.
  
     0.614
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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