Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
CF8_0976Putative transcriptional regulator. (226 aa)    
Predicted Functional Partners:
CF8_0977
Hypothetical protein.
 
     0.883
CF8_0979
FAD-dependent pyridine nucleotide-disulfide.
 
     0.633
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
   0.607
folE-2
GTP cyclohydrolase.
       0.582
CF8_2141
Transcriptional regulator.
   
    0.567
CF8_1004
Chromosome replication initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
    0.528
CF8_0993
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.493
CF8_3808
Helix-turn-helix, HxlR type.
   
    0.464
CF8_1172
Hypothetical protein.
 
    0.453
CF8_1169
Respiratory nitrate reductase chaperone NarJ.
 
     0.437
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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