Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CF8_0979FAD-dependent pyridine nucleotide-disulfide. (384 aa)    
Predicted Functional Partners:
CF8_2138
Rieske (2Fe-2S) domain-containing protein.
 
 
  0.894
CF8_3285
Assimilatory nitrate reductase (NADH) alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.824
CF8_0977
Hypothetical protein.
       0.774
folE-2
GTP cyclohydrolase.
       0.774
CF8_0032
Alkane 1-monooxygenase.
  
 0.721
alkB
Alkane 1-monooxygenase.
  
 0.721
CF8_3280
Assimilatory nitrite reductase (NAD(P)H) large; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 
0.720
CF8_3279
Nitrite reductase (NAD(P)H), small subunit.
 
 
 0.703
CF8_4037
Nitrogen-fixing NifU domain-containing protein.
  
 0.698
CF8_1167
Respiratory nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.695
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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