STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1002Endonuclease/exonuclease/phosphatase. (291 aa)    
Predicted Functional Partners:
CF8_3263
PTS system glucose-like transporter subunit IIB.
    
  0.746
CF8_1290
ABC sugar transporter.
 
      0.666
CF8_1003
Lysine exporter protein LysE/YggA.
       0.615
CF8_3128
Glycerophosphoryl diester phosphodiesterase.
     0.611
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
  0.484
CF8_0473
Sialidase.
  
     0.456
CF8_1004
Chromosome replication initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
  
    0.451
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.