STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1005ABC transporter-like protein. (253 aa)    
Predicted Functional Partners:
CF8_1006
Polar amino acid ABC transporter, inner membrane.
 0.999
CF8_3869
Polar amino acid ABC transporter, inner membrane.
 0.987
CF8_3868
Polar amino acid ABC transporter, inner membrane.
 
 0.986
CF8_1007
Extracellular solute-binding protein.
 
 0.967
CF8_2573
Polar amino acid ABC transporter, inner membrane; Belongs to the binding-protein-dependent transport system permease family.
 0.964
CF8_3870
Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.946
CF8_3250
Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.914
CF8_2574
Extracellular solute-binding protein.
 
 0.900
CF8_2503
Glutamate synthase (NADH) large subunit.
  
  
 0.512
CF8_2570
ABC transporter-like protein.
 
     
0.493
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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