Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1091Hypothetical protein. (129 aa)    
Predicted Functional Partners:
CF8_1090
FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
  
  
 0.858
CF8_2413
Hypothetical protein.
  
     0.646
CF8_3907
Hypothetical protein.
  
   
 0.609
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
     
 0.605
CF8_3094
Hypothetical protein.
  
     0.581
CF8_1089
GCN5-related N-acetyltransferase.
       0.545
CF8_3906
Hypothetical protein.
  
     0.542
CF8_1098
Rod shape-determining protein.
 
     0.498
CF8_2989
Cell envelope-related transcriptional.
  
     0.464
CF8_2974
Hypothetical protein.
  
     0.446
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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