Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_1127Aminotransferase, class V. (391 aa)    
Predicted Functional Partners:
CF8_2135
NifU family SUF system FeS assembly protein.
  
 0.990
CF8_2770
SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.966
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
 
 0.959
CF8_1236
UBA/THIF-type NAD/FAD binding protein.
   
 0.956
CF8_4037
Nitrogen-fixing NifU domain-containing protein.
  
 0.899
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 0.898
CF8_3492
Hypothetical protein.
    
 0.898
CF8_2773
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.878
CF8_3664
HesB/YadR/YfhF-family protein.
  
 
 0.847
CF8_2769
Cysteine desulfurase.
  
  
 
0.846
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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