Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1200Hypothetical protein. (218 aa)    
Predicted Functional Partners:
CF8_1201
Hypothetical protein.
 
     0.858
CF8_1199
Hypothetical protein.
 
     0.765
CF8_0960
Type II secretion system protein E.
  
     0.741
CF8_0880
Hypothetical protein.
  
     0.708
CF8_0961
Type II secretion system protein.
  
     0.698
CF8_0879
Putative signal peptide protein.
 
     0.689
CF8_0878
DNA binding domain-containing protein.
  
     0.683
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.669
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
  0.639
CF8_0965
Hypothetical protein.
  
     0.614
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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