Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_1285ROK family protein. (380 aa)    
Predicted Functional Partners:
CF8_3263
PTS system glucose-like transporter subunit IIB.
  
 0.991
CF8_2801
PTS system, fructose subfamily, IIC subunit.
    
 0.906
CF8_0029
Polyphosphate glucokinase.
  
  
0.761
CF8_1284
Malate synthase A; Belongs to the malate synthase family.
     
 0.709
CF8_2797
Alcohol dehydrogenase.
 
 
 0.693
CF8_1286
Xylose ABC transporter, substrate-binding.
 
     0.659
CF8_1287
ABC transporter-like protein.
 
    0.641
CF8_1288
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.639
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.618
CF8_1188
Hypothetical protein.
  
 
 0.605
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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