Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_1302Transcriptional repressor. (114 aa)    
Predicted Functional Partners:
CF8_3935
Heavy metal transport/detoxification protein.
  
  
 0.611
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
  
  0.491
CF8_3243
Putative exopolysaccharide biosynthesis protein.
     
 0.456
CF8_1622
Hypothetical protein.
    
  0.444
CF8_1303
N-acetylmuramoyl-L-alanine amidase.
       0.442
CF8_1457
Hypothetical protein.
    
  0.442
CF8_1159
Hypothetical protein.
    
  0.425
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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