Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1622Hypothetical protein. (82 aa)    
Predicted Functional Partners:
CF8_1623
Hypothetical protein.
       0.828
CF8_1621
Protoporphyrinogen oxidase.
       0.688
CF8_2315
3-hydroxyacyl-CoA dehydrogenase.
     
  0.628
CF8_3649
Short chain enoyl-CoA hydratase.
     
  0.628
CF8_1393
Sigma-70 region 2 domain-containing protein; Belongs to the sigma-70 factor family.
  
 
 0.555
CF8_3531
Sigma-70 region 4 domain-containing protein; Belongs to the sigma-70 factor family.
  
 
 0.555
CF8_1624
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.553
CF8_1625
Hypothetical protein.
     
 0.553
CF8_1090
FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
  
    0.529
CF8_0054
Transcriptional regulator.
    
  0.444
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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