Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1669Hypothetical protein. (117 aa)    
Predicted Functional Partners:
CF8_3398
Hypothetical protein.
   
 0.961
CF8_3401
ATPase domain-containing protein.
   
 0.835
CF8_1693
ATPase domain-containing protein.
   
 0.810
CF8_2195
Thioredoxin reductase.
  
 0.807
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.641
CF8_1165
GAF domain-containing protein.
   
 0.637
CF8_0173
ATPase domain-containing protein.
 
 
 0.593
CF8_0239
Response regulator receiver.
    
 0.566
CF8_0508
Hypothetical protein.
  
     0.554
CF8_4033
Hydrogenase (NiFe) small subunit HydA.
   
 0.536
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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