Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_1899Binding-protein-dependent transport system. (336 aa)    
Predicted Functional Partners:
CF8_1897
Binding-protein-dependent transport system.
 0.999
CF8_1900
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
 
 0.996
CF8_1901
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
 
 0.996
CF8_1898
Extracellular solute-binding protein.
 
 0.989
CF8_0477
Extracellular solute-binding protein.
 
 0.982
CF8_2959
ABC transporter-like protein.
  
 0.951
CF8_0480
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
 
  
  0.872
CF8_0479
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
  0.868
CF8_1902
Recombination factor protein RarA.
       0.774
CF8_1903
Methylase.
       0.773
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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