Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1900Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily. (366 aa)    
Predicted Functional Partners:
CF8_1897
Binding-protein-dependent transport system.
 0.998
CF8_1899
Binding-protein-dependent transport system.
 
 0.996
CF8_0478
Binding-protein-dependent transport system.
 
 0.978
CF8_1898
Extracellular solute-binding protein.
 
 0.960
CF8_1901
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
 
  
 
0.948
CF8_3644
ABC transporter-like protein.
 
  
 
0.943
CF8_0477
Extracellular solute-binding protein.
 
 0.941
CF8_3018
ABC transporter-like protein; Belongs to the ABC transporter superfamily.
 
  
 
0.931
CF8_1035
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
    
0.902
CF8_1265
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
    
0.873
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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