Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_1902Recombination factor protein RarA. (456 aa)    
Predicted Functional Partners:
CF8_1250
UvrD/REP helicase.
 
 
 0.972
CF8_3797
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.941
CF8_0063
DEAD/DEAH box helicase domain-containing.
    
 0.921
CF8_1899
Binding-protein-dependent transport system.
       0.774
CF8_1900
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
       0.774
CF8_1901
Oligopeptide/dipeptide ABC transporter, ATPase; Belongs to the ABC transporter superfamily.
       0.774
CF8_1903
Methylase.
       0.773
CF8_0195
DNA polymerase III, subunits gamma and tau.
   
  0.727
CF8_0270
DNA polymerase III, delta prime subunit.
   
  0.727
CF8_1551
DNA polymerase III, delta subunit.
    
  0.709
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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