Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1946Aldo/keto reductase. (315 aa)    
Predicted Functional Partners:
CF8_3487
Aldo/keto reductase.
 
 0.809
CF8_4123
Hypothetical protein.
    
  0.696
CF8_0410
Histone deacetylase superfamily protein.
   
   0.636
CF8_1523
CbbX protein.
    
   0.610
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.590
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
     
  0.504
CF8_2001
Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.493
CF8_3086
MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.493
CF8_3307
MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.493
CF8_1376
Hypothetical protein.
   
   0.484
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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