Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CF8_1963Peptidase M50; Belongs to the peptidase M50B family. (360 aa)    
Predicted Functional Partners:
CF8_2800
Ribokinase-like domain-containing protein; Belongs to the carbohydrate kinase PfkB family.
  
    0.837
CF8_1962
Hypothetical protein.
 
     0.692
CF8_1964
tRNA (adenine-58-N(1)-) methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.692
CF8_1166
Major facilitator transporter.
  
    0.669
CF8_1163
Hypothetical protein.
  
    0.661
CF8_1965
Hypothetical protein.
 
     0.641
arc
Vesicle-fusing ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
 
     0.610
CF8_2413
Hypothetical protein.
  
     0.563
CF8_1098
Rod shape-determining protein.
 
     0.510
CF8_0005
Hypothetical protein.
  
     0.480
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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