Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_1986L-lysine 2,3-aminomutase. (489 aa)    
Predicted Functional Partners:
CF8_1988
D-lysine 5,6-aminomutase alpha subunit.
 
  
 0.981
CF8_1989
Beta-lysine 5,6-aminomutase beta subunit.
 
  
 0.979
CF8_1987
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
     0.899
CF8_1990
3-aminobutyryl-CoA ammonia-lyase.
 
     0.871
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.747
CF8_0338
Amine oxidase.
    
  0.705
CF8_3339
3-keto-5-aminohexanoate cleavage enzyme.
 
   
 0.697
CF8_3302
Aspartate racemase.
     
  0.687
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.572
CF8_0199
Aspartate kinase; Belongs to the aspartokinase family.
    
 0.517
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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