Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_1989Beta-lysine 5,6-aminomutase beta subunit. (245 aa)    
Predicted Functional Partners:
CF8_1988
D-lysine 5,6-aminomutase alpha subunit.
  
  0.999
CF8_1986
L-lysine 2,3-aminomutase.
 
  
 0.979
CF8_1987
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
 
 0.974
CF8_1990
3-aminobutyryl-CoA ammonia-lyase.
 
     0.959
CF8_3048
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
  0.820
CF8_0584
Hypothetical protein.
 
     0.801
CF8_1956
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.798
CF8_3339
3-keto-5-aminohexanoate cleavage enzyme.
 
   
 0.786
CF8_2503
Glutamate synthase (NADH) large subunit.
     
  0.684
CF8_3302
Aspartate racemase.
     
  0.666
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.