Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_1999Alcohol dehydrogenase. (338 aa)    
Predicted Functional Partners:
CF8_2801
PTS system, fructose subfamily, IIC subunit.
  
 
 0.820
CF8_3263
PTS system glucose-like transporter subunit IIB.
   
 
 0.783
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
 0.714
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
  
 
 0.675
CF8_0582
Threonine dehydratase.
   
 
 0.633
CF8_2921
8-amino-7-oxononanoate synthase.
  
 
 0.629
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
  0.625
CF8_1964
tRNA (adenine-58-N(1)-) methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
     
  0.625
CF8_2480
Phosphoglucomutase.
   
 0.614
CF8_0757
Alcohol dehydrogenase.
  
 
 
0.607
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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