Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_2005Luciferase family protein. (338 aa)    
Predicted Functional Partners:
CF8_2408
Short chain dehydrogenase.
    
  0.619
CF8_4145
EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily.
    
  0.614
CF8_1051
Diacylglycerol O-acyltransferase.
    
  0.608
CF8_2230
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
    
  0.608
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
  0.607
CF8_3492
Hypothetical protein.
    
  0.607
CF8_3036
HAD family hydrolase.
    
  0.599
CF8_3696
NADPH-dependent FMN reductase.
 
  0.579
CF8_2004
Hypothetical protein.
       0.554
CF8_3722
Short-chain dehydrogenase/reductase SDR.
  
  
  0.538
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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