STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_2017Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (297 aa)    
Predicted Functional Partners:
CF8_1144
(Acyl-carrier-protein) S-malonyltransferase.
  
 0.820
CF8_0565
Short-chain dehydrogenase/reductase SDR.
  
 0.808
CF8_2503
Glutamate synthase (NADH) large subunit.
     
 0.794
CF8_2018
OsmC family protein.
       0.773
CF8_3263
PTS system glucose-like transporter subunit IIB.
     
 0.765
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.663
CF8_2420
Thioredoxin reductase.
   
 0.663
CF8_0088
Cyclic nucleotide-binding protein.
    
  0.653
CF8_0225
Cyclic nucleotide-binding protein.
    
  0.653
CF8_4204
Hypothetical protein.
    
  0.653
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.